Delicious Homemade Pumpkin Cream Cheese Muffins!

October 10, 2025 Rebecca Firth

You might be wondering if this Pumpkin Cream Cheese Muffin is a Starbucks copycat recipe, and the answer is yes, yes it is! BUT, it’s a jazzed-up, glossed-up version that you can easily make at home (yay!).

We start with a super moist pumpkin muffin base and then fill it with a simple cream cheese filling (that’s just cream cheese, confectioners’ sugar and vanilla) and finish it with a spiced pumpkin seed-brown sugar topping. These muffins are a flavor explosion!

I started recipe testing this recipe years ago. Every fall, I pick up where I left off and am never quite dazzled with the results. The filling just wasn’t turning out (sometimes it would get a weird texture when baked). However, I’m so so sooo happy to report that it is finally perfect! I pulled back the filling to three easy ingredients that stay nice and glossy through the baking process.

This pumpkin muffin recipe hits so many high notes: moist, fluffy, tender, spiced pumpkin muffin base with a creamy, tangy filling, all topped with the perfect touch of spice and sweetness from the pumpkin seed crunch on top.

I can’t wait to hear what you think!

Rebecca Firth

Inside view of a halved homemade Pumpkin Cream Cheese Muffin showing the moist pumpkin crumb, creamy center, and crunchy pepita topping. Starbucks Copycat.

The Baker’s Guide to Measuring Flour

One of the biggest (and most common) mistakes in baking is how we measure flour. If you find yourself without a scale, see my top tips on how to properly measure flour for the perfect amount every time!

Starbucks Copycat Pumpkin Cream Cheese Muffin on a plate with a gold spoon holding brown sugar. Features a crunchy topping, pepitas, and a visible cream cheese swirl.

My Very Favorite Pro-Baking Tips for
THE BEST Cream Cheese Pumpkin Muffins!

  • Chill The Cream Cheese Filling. You’ll make this first, so you have time to chill it. Doing so will thicken the consistency, making it easier to fill each pumpkin muffin with the perfect amount of cream cheese.
  • Let the Muffin Batter Rest. I swear by this! Letting the muffin batter rest lets the starches in the batter absorb the moisture and swell up (puffy tops!).
  • Smooth the Muffin Batter in Each Muffin Well. Take note that when I took the step-by-step photos, I did not smooth the tops of the batter before adding the cream cheese filling. As a result, the muffins didn’t rise in a nice uniform fashion (more lopsided). When the tops are smooth and even, they rise to the gorgeous domes that you see in the photos!

Let’s make some really beautiful pumpkin muffins!

Top-down view of a partially eaten Starbucks Copycat Pumpkin Cream Cheese Muffin on a plate, revealing the moist pumpkin crumb, creamy white filling, and a topping with green pepitas.

Step-by-Step Instructions & Photos for
These Beautiful Fall Muffins

For The Cream Cheese Filling

STEP 1: Stir the softened cream cheese with vanilla (you can use real vanilla beans, vanilla extract or vanilla paste) until smooth. Mix in the confectioners’ sugar (also called powdered sugar, icing sugar or 10x), stirring until creamy and no lumps remain. Add the cream cheese filling to a pastry bag fitted with a medium round tip or use a regular plastic bag. Set in the fridge until ready to use.

For the Muffins

STEP 1: Gather your pumpkin muffin ingredients: butter, brown sugar, granulated sugar, vanilla, cinnamon, nutmeg, ginger, cloves, 100% pumpkin puree, baking powder, baking soda, salt, eggs, all-purpose flour and whole milk.
STEP 2 In a large bowl, cream together the butter, brown sugar, granulated sugar, vanilla, cinnamon, nutmeg, ginger and cloves until smooth and well combined.
STEP 3: Add the eggs one at a time, ensuring each is well blended before adding the next. Scrape down the sides and bottom of the bowl.
STEP 4: Add in the pumpkin puree, baking powder, baking soda and salt. The batter may curdle a bit at this point; that’s fine.
STEP 5: Mix in half of the flour until just combined and you still see some small streaks.
STEP 6: Mix in half of the milk, again mixing until just combined. Repeat with the remaining flour and milk. Cover the bowl and set aside.

For the Brown Sugar-Spiced Pumpkin Seeds

STEP 1: In a small bowl, whisk together the coarsely chopped pumpkin seeds (it’s ok if some are still whole), Demerara sugar, brown sugar, cinnamon and nutmeg. Set aside.

To Assemble

STEP 1: Fill each muffin liner almost to the top. Use the back of a spoon to smooth the tops of the muffins. I didn’t do this for the step-by-step photos, but you’ll end up with prettier muffins if you do!
STEP 2: Cut the pastry bag (or the corner of the plastic bag), place the tip just inside the top of the muffin batter and add about 1 tablespoon of cream cheese filling. Ensure that some of the cream cheese filling is visible on top of the muffin, as shown in the photo above.
STEP 3: Sprinkle a thick layer of the Brown Sugar-Spiced Pumpkin Seeds around the cream cheese filling and bake (see recipe for temperature and time specifics).
STEP 4: Let the muffins cool for a bit in the muffin pan before transferring to a wire rack. If they seem squishy when you’re trying to get them out of the pan, let them sit for another 5 to 10 minutes.
Starbucks Copycat Pumpkin Cream Cheese Muffin on a small plate with a gold spoon holding brown sugar in the foreground. Moist, spiced muffin with streusel, pepitas, and a creamy center.
Overhead shot of a whole Pumpkin Cream Cheese Muffin, nestled in its paper liner, showcasing the streusel topping, green pepitas, and a creamy white cream cheese swirl.
Top-down view of a Pumpkin Cream Cheese Muffin cut in half, showcasing the moist pumpkin crumb, visible cream cheese filling, pepitas, and a wooden-handled knife.

More Delicious Pumpkin Recipes!

I hope you’ll try this super delicious Pumpkin Loaf with a spiced-sugar exterior (like apple cider donuts!) and these Chocolate Chip Pumpkin Muffins!

You can find all of the pumpkin recipes here!

I hope you love these mega delish cream cheese pumpkin muffins!

Homemade Pumpkin Cream Cheese Muffins Recipe with streusel and pepitas. Moist, spiced pumpkin muffins filled with sweet cream cheese. Starbucks Copycat.
Print

Mega Delicious Pumpkin Cream Cheese Muffin Recipe

Moist, fluffy pumpkin muffins with a creamy cream cheese filling and a crunchy pumpkin seed-brown sugar crust that you will love!
Course Breakfast, Brunch, Snack
Cuisine American
Keyword Pumpkin Muffins, Cream Cheese, Starbuck’s Dup, Rebecca Firth, DisplacedHousewife Well-Tested Recipe
Prep Time 20 minutes
Cook Time 20 minutes
Rest Time 30 minutes
Total Time 1 hour 10 minutes
Servings 16 Muffins

Ingredients

For the Cream Cheese Filling

  • 4 ounces (120 g) cream cheese softened
  • 1/4 vanilla bean split & scraped (or 1 teaspoon vanilla bean paste or real vanilla extract)
  • 1 cup (120 g) confectioners' sugar

For the Pumpkin Muffins

  • 12 tablespoons (170 g) unsalted butter room temperature
  • 1 cup (220 g) light or dark brown sugar packed
  • ½ cup (100 g) granulated sugar
  • 1 tablespoon (13 g) real vanilla extract
  • 1 tablespoon cinnamon
  • 1 teaspoon nutmeg
  • 1 teaspoon ground ginger
  • 1/2 teaspoon cloves
  • 3 large eggs room temperature
  • 1 cup (244 g) pure pumpkin puree not pie filling; 100% pumpkin
  • 2 ½ teaspoons baking powder
  • 1 teaspoon baking soda
  • 1 teaspoon sea salt
  • 2 3/4 cups (371 g) all-purpose flour
  • 1/2 cup (112 g) whole milk room temperature

For the Brown Sugar-Spiced Pumpkin Seeds

  • 1/3 cup (40 g) pumpkin seeds coarsely chopped
  • 3 tablespoons (36 g) Demerara sugar
  • 2 tablespoons (28 g) light or dark brown sugar packed
  • 1/2 teaspoon cinnamon
  • 1/4 teaspoon nutmeg

Instructions

For the Cream Cheese Filling

  • In a medium bowl, stir the softened cream cheese with vanilla until smooth. Mix in the confectioners' sugar, stirring until creamy and no lumps remain. Add the cream cheese filling to a pastry bag fitted with a medium round tip or use a regular plastic bag. Set in the fridge until ready to use.

For the Pumpkin Muffins

  • Place the butter, light brown sugar, granulated sugar, vanilla, cinnamon, nutmeg, ginger and cloves in the bowl of an electric stand mixer fitted with the paddle attachment and mix on medium until creamy and lightened in color, about 4-5 minutes. Scrape the sides and bottom of the bowl to make sure everything is well blended.
  • With the mixer on low, add the eggs, one at a time, mixing each completely before adding the next.
  • Add the pumpkin, baking powder, baking soda, and salt, and mix for an additional 1 minute. Periodically scrape down the sides and bottom of the bowl to make sure everything is well blended. It might look a little grainy after adding the pumpkin; that's fine (see note in step-by-step photos).
  • Add the flour in two batches, alternating with the milk, mixing on low and stopping when just combined. Let the muffin batter sit for 30 minutes while you mix together the Brown Sugar-Spiced Pumpkin Seeds, the oven pre-heats and you prepare the muffin tin.
  • Preheat the oven to 425℉ (220℃) and line every other muffin well with a paper liner.

For the Brown Sugar-Spiced Pumpkin Seeds

  • In a small bowl, whisk together the pumpkin seeds, Demerara sugar, brown sugar, cinnamon and nutmeg. Set aside.

To Assemble

  • Fill each muffin liner almost to the top and smooth the tops with the back of a spoon. The mixture is thick, and this doesn't have to be perfect.
  • Grab your cream cheese filling from the refrigerator, cut the tip of your pastry bag (or the corner of the plastic bag), press the tip about 1/4 inch (.6 cm) into the center of the pumpkin muffin batter and squeeze about 1 tablespoon into each muffin, leaving some cream cheese filling showing in the top of the muffin (see photos above recipe).
  • Sprinkle a thick coating of the Brown Sugar-Spiced Pumpkin Seeds around the perimeter of the muffins.
  • Bake the pumpkin muffins in the center of the oven for 5 minutes and then lower the temperature to 350℉ (177℃) and bake for 15 minutes more. When done, the muffins will be puffed up and a toothpick pressed along the sides of the muffin will come out with some crumbs, but no wet batter. For best results, bake one tin at a time. Let the muffins cool in the muffin pan for about 10ish minutes, then use a butter knife to help get them out to finish cooling on a rack.

Notes

  • Mixer Optional
    • This is a mixer optional recipe. You can use an electric stand mixer fitted with the paddle attachment, a handheld mixer or a bowl and a spatula.
  • The Brown Sugar-Spiced Pumpkin Seed Topping
    • The topping will soften over time. If you’re making these ahead of time, consider omitting the brown sugar from the topping and adding in more Demerara Sugar.
    • If you don’t have pumpkin seeds handy, toasted and chopped pecans or walnuts would be delicious here!
  • Pumpkin Puree
    • Make sure you use 100% pure pumpkin puree and not pumpkin pie filling.
    • If you use real pumpkin, make sure it is drained. You also want to make sure it is a thick consistency, or the muffins won’t turn out.
    • My absolute favorite, ride-or-die pumpkin puree is Libby’s for my US friends!
  • Filling Every Other Muffin Well
    • I have you do this with all of my muffin recipes because it lets more heat circulate around each muffin in the oven, resulting in a higher muffin top. However, this pumpkin batter bakes up with beautiful crowns both ways. If you’re short on time or you only have one muffin tin, feel free to fill up all of them. They will still bake up beautifully! 
  • Make-Ahead Muffins
    • I love these muffins best the same day they are made. You can make the muffin batter, cream cheese filling and the brown sugar-spiced pumpkin seed mixture the day before you plan on serving them. Store everything separately in covered containers and stash in the fridge until you’re ready to bake. The muffins may need an extra minute or two of bake time.
  • Storage
    • Store the muffins at room temperature in an airtight container. 

The post Delicious Homemade Pumpkin Cream Cheese Muffins! appeared first on DisplacedHousewife.

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